Each faculty member actively pursues publication of research. Below is a short list of the most recent publications by all faculty members, as well as a more complete list of recent publications for each faculty member. Authors marked with an * are student authors.

Most Recent Publications

• Ramy K Aziz, Daniela Bartels, Aaron A Best, Matthew DeJongh, Terrence Disz,
  Robert A Edwards, Kevin Formsma*, Svetlana Gerdes, Elizabeth M Glass, Michael Kubal, Folker Meyer, Gary J Olsen, Robert Olson, Andrei L Osterman, Ross A Overbeek, Leslie K McNeil, Daniel Paarmann, Tobias Paczian, Bruce Parrello, Gordon D Pusch, Claudia Reich, Rick Stevens, Olga Vassieva, Veronika Vonstein, Andreas Wilke, Olga Zagnitko, The RAST Server: Rapid Annotations using Subsystems Technology ,BMC Genomics, Vol. 9, No. 75, February, 2008.
• DeJongh, M., Formsma, K.*, Boillot, P.*, Gould, J.*, Rycenga, M.*, Best, A.,
  Toward the automated generation of genome-scale metabolic networks in the
  SEED, BMC Bioinformatics, Vol. 8, No. 139, April, 2007.
• Best, A., DeJongh, M., Barton, A., Brown, J., Barney, C., Models of
  Interdisciplinary Research and Service Learning at Hope College, Council on
  Undergraduate Research Quarterly, December, 2007.
• McFall, R.L. , Dershem, H.L. and Davis, D.^*. "Experiences Using a Collaborative Electronic Textbook: Bringing the "Guide on the Side" Home with You." Thirty-Seventh SIGCSE Technical Symposium on Computer Science Education. Houston, TX: ACM, 2006. 339-43. Vol. 38.
• Jipping, Michael J., Henry, S.^*, Ludewig, K.^*, and Tableman, L.^* "How to Integrate FPGAs into a Computer Organization Course". Proceedings of Thirty-Seventh SIGCSE Technical Symposium on Computer Science Education. Vol. 38. Houston, TX: ACM, 2006.
• McFall, R.L. "Electronic Textbooks That Transform How Textbooks Are Used." The Electronic Library 23.1 (2005): 72-81.
• Jipping, M.J., Kalafut, A.^*, Kooistra, N.^*, and Ludewig, K.^*, "Investigating Wired and Wireless Networks Using a Java-based Programmable Sniffer," at ITiCSE 2004, June 28-30, 2004.
• DeJongh, M., “Introducing Bioinformatics into the Undergraduate Curriculum,” at Bio2010: Computational Solutions to Biological Problems, Washington University School of Medicine, June 24-26, 2003.
• DeJongh, M. and Burnatowska-Hledin, M., “Introducing Bioinformatics into the Undergraduate Curriculum,” at Innovative Science Teaching: Enhancing Learning with Technology, DePauw University, May 31-June 1, 2003.
• DeJongh, M. and Burnatowska-Hledin, M., “Introductory Bioinformatics Exercises using Internet Resources,” at Bioinformatics in the Undergraduate Curriculum, Dickinson College, March 21-22, 2003.

Publications by Faculty Member

Matt DeJongh

• Ramy K Aziz, Daniela Bartels, Aaron A Best, Matthew DeJongh, Terrence Disz,
  Robert A Edwards, Kevin Formsma*, Svetlana Gerdes, Elizabeth M Glass, Michael Kubal, Folker Meyer, Gary J Olsen, Robert Olson, Andrei L Osterman, Ross A Overbeek, Leslie K McNeil, Daniel Paarmann, Tobias Paczian, Bruce Parrello, Gordon D Pusch, Claudia Reich, Rick Stevens, Olga Vassieva, Veronika Vonstein, Andreas Wilke, Olga Zagnitko, The RAST Server: Rapid Annotations using Subsystems Technology ,BMC Genomics, Vol. 9, No. 75, February, 2008.
• DeJongh, M., Formsma, K.*, Boillot, P.*, Gould, J.*, Rycenga, M.*, Best, A.,
  Toward the automated generation of genome-scale metabolic networks in the
  SEED, BMC Bioinformatics, Vol. 8, No. 139, April, 2007.
• Best, A., DeJongh, M., Barton, A., Brown, J., Barney, C., Models of
  Interdisciplinary Research and Service Learning at Hope College, Council on
  Undergraduate Research Quarterly, December, 2007.
• DeJongh, M., Burnatowska-Hledin, M., Development and Implementation of an Introductory Bioinformatics Course at Hope College, Special Issue on
  Bioinformatics of Transformations: Liberal Arts in the Digital Age, Vol. 2,
  No. 1, April, 2004.
• DeJongh, M., “Introducing Bioinformatics into the Undergraduate Curriculum,” at Bio2010: Computational Solutions to Biological Problems, Washington University School of Medicine, June 24-26, 2003.
• DeJongh, M. and Burnatowska-Hledin, M., “Introducing Bioinformatics into the Undergraduate Curriculum,” at Innovative Science Teaching: Enhancing Learning with Technology, DePauw University, May 31-June 1, 2003.
• DeJongh, M. and Burnatowska-Hledin, M., “Introductory Bioinformatics Exercises using Internet Resources,” at Bioinformatics in the Undergraduate Curriculum, Dickinson College, March 21-22, 2003.
• McEntire, R., et al., “An Evaluation of Ontology Exchange Languages for Bioinformatics,” in Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, pp. 239-250, AAAI Press, Menlo Park, CA, 2000.

Herb Dershem

• Dershem, H.L., McFall, R.L., and N. Uti^*, "A Linked List Prototype for the Visual Representation of Abstract Data Types, " Interactive Multimedia Electronic Journal of Computer-Enhanced Learning, 4,2(Oct, 2002).
• Dershem, H.L. and N. Uti, "Animation of Java Linked Lists," SIGCSE Bulletin, 34,1(Feb, 2002), 53-57.
• Dershem, H.L., Dykstra, J.^*, and K. Suppes^*, "An Abstract Window Toolkit Visualizer for Computer Science Instruction," Proceedings of the 33rd Midwest Instruction and Computing Symposium (CD-ROM), April 14-15, 2000, Minneapolis, MN.
• Dershem, H.L., Parker, D.E.^*, and R. Weinhold^*, "A Java Function Visualizer," Journal of Computing in Small Colleges, 15,1(Oct, 1999). 221-230.
• Dershem, H.L. and J. Vanderhyde^*, "Java Class Visualization for Teaching Object-Oriented Concepts," SIGCSE Bulletin, 20,1(Mar, 1998), 53-57.

Michael Jipping

• Jipping, Michael J., Henry, S.^*, Ludewig, K.^*, and Tableman, L.^* "How to Integrate FPGAs into a Computer Organization Course". Proceedings of Thirty-Seventh SIGCSE Technical Symposium on Computer Science Education. Vol. 38. Houston, Tx: ACM, 2006.
• Jipping, M.J., Kalafut, A.^*, Kooistra, N.^*, and Ludewig, K.^*, "Investigating Wired and Wireless Networks Using a Java-based Programmable Sniffer," presented at ITiCSE 2004, June 28-30, 2004.
• Jipping, M.J., Bugaj, A.^*, Mihalkova, L^*. and D. Porter^*, "Using Java to Teach Networking Using a Programmable Network Sniffer", Proceedings of the 2003 SIGCSE Technical Symposium.
• Jipping, M.J., Symbian OS Communications Programming, Symbian Press by J. Wiley and Sons, July 2002
• Jipping, M.J., Marlowe, S.^*, and Sherstov, A.^*, "Using Java to Design and Test Hardware Circuits Over a Classroom Network", Proceedings of the 2002 SIGCSE Technical Symposium, SIGCSE Technical Bulletin, Vol. 34, No. 1 (March 2002).
• Jipping, M.J., Dieter, S.^*, Krikke, J.^* and Sandro, S.^*, "Using Handheld Computers in the Classroom: Laboratories and Collaboration on Handheld Machines", Proceedings of the 2001 SIGCSE Technical Symposium, SIGCSE Technical Bulletin, Vol. 33, No. 1 (March 2001), pp. 169-173.
• Jipping, M.J., and Bruce, K., "Imperative Language Paradigm", chapter 94 in The Computer Science Engineering Handbook, A. Tucker, Ed., CRC Press, 1997. pp, 1983-2005.

Ryan McFall

• McFall, R.L. , Dershem, H.L. and Davis, D.^*. "Experiences Using a Collaborative Electronic Textbook: Bringing the "Guide on the Side" Home with You." Thirty-Seventh SIGCSE Technical Symposium on Computer Science Education. Houston, TX: ACM, 2006. 339-43. Vol. 38.
• McFall, R.L. "Electronic Textbooks That Transform How Textbooks Are Used." The Electronic Library 23.1 (2005): 72-81.
• McFall, R.L., "Evaluation of a Prototype of an Electronic Textbook Application," Proceedings of the 2004 World Conference on Educational Multimedia, Hypermedia and Telecommunications, p. 1530-1535.
• McFall, R.L., Urban-Lurain, M. and Weinshank, D.J., "A Web-To-Databse System for Collecting Student Data," Proceedings of the IEEE Frontiers in Education 2002, November, 2002, F1E14-F1E18.
• Dershem, H.L., McFall, R.L., and N. Uti^*, "A Linked List Prototype for the Visual Representation of Abstract Data Types, " Interactive Multimedia Electronic Journal of Computer-Enhanced Learning, 4,2(Oct, 2002).
• Dershem, H.L., McFall, R.L., and N. Uti^*, "Animation of Java Linked Lists," SIGCSE Bulletin, 34,1(Mar, 2001), 53-57.
• McFall, R.L. and Stegink, G., "Introductory Computer Science for General Education: Laboratories, Textbooks and the Internet," SIGCSE Bulletin, 29,1(Mar, 1997), 96-100.
• McFall, R.L.^* and Dershem, H.L., "Finite State Machine Simulation in an Introductory Lab," SIGCSE Bulletin, 26,1(Mar, 1994), 126-140.